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  • Laurdan br In contrast to OPG

    2022-05-30


    In contrast to OPG-rs2073618, the presence of RANKL-rs9533156 heterozygosity with OPG-rs2073617 carrying one or two nonrisk C Laurdan was protective against BC risk in our study.
    Table 6 Correlation of Haplotypes With ER/PR Status, Bone Metastasis, and Tumor Size in Breast Cancer Group
    Haplotype
    Frequency
    Total Negative ER/PR Positive ER/PR Adjusted OR
    Global
    Without Metastasis With Metastasis
    Olfat G. Shaker, Mahmoud A. Senousy
    SNP-SNP Interactions
    Table 7 Protein Interaction With 4 Studied Genes (RANKL, OPG, VDR, and CHI3L1)
    Category Protein Interaction With Genes
    Genes
    Count % P-Value Benjamini
    UCSC_TFBS STAT5B
    UCSC_TFBS STAT
    UCSC_TFBS STAT1
    UCSC_TFBS SRY
    UCSC_TFBS BACH2
    UCSC_TFBS IK3
    UCSC_TFBS ROAZ
    UCSC_TFBS HAND1E47
    UCSC_TFBS RSRFC4
    UCSC_TFBS GRE
    UCSC_TFBS ER
    UCSC_TFBS RP58
    UCSC_TFBS TATA
    Analysis was performed by David Bioinformatics Resources 6.8, National Institute of Allergy and Infectious Diseases/National Institutes of Health via Gene Laurdan ID Conversion Tool. List of 4 studied genes was introduced, and protein interaction option by UCSC_TFBS genome browser was chosen.
    Notably, the C allele of OPG-rs2073617 was associated with decreased risk of advanced prostate cancer.52 A possible explanation is that rs2073617 SNP is associated with an altered secondary structure, which may cause differences in OPG messenger RNA expression.31 However, the OPG-rs2073617 T/C alleles had no effect on serum OPG in prostate cancer.52 Thus, the mechanism of the protective effect of OPG-rs2073617 should be further investigated.
    Reports about the association of CHI3L1 polymorphisms with BC were few. We found significant association between CHI3L1-rs4950928 and BC, where the minor homozygote GG genotype was associated with increased BC risk, whereas the CG heterozygote was protective. In contrast, CHI3L1-rs4950928 was not a significant predisposing factor of BC in a large caseecontrol study.25 Further-more, no association was found for CHI3L1-rs4950928 with glio-blastoma,53 uterine cancer,54 or hepatocellular carcinoma.55 On the other hand, the C allele of CHI3L1-rs4950928 was significantly higher in patients with rectal cancer than those with colon cancer in an Egyptian population.33 These discordant results may be attributable to different tumors, sample sizes, and populations studied.
    We observed significant interactions between RANKL-rs9533156 and OPG SNPs with CHI3L1-rs4950928 in relation to BC risk. These interactions are consistent with the link between these genes and diseases characterized by inflammation and tissue
    remodeling. High serum YKL-40 level is a nonspecific inflamma-tory marker and was associated with poor prognosis in BC.56,57 Genetic variants of CHI3L1 and RANK/RANKL genes were asso-ciated with inflammatory diseases such as rheumatoid arthritis.58,59 Genetic variants in the OPG locus have been implicated in anky-losing spondylitis.60 RANKL might induce CHI3L1 indirectly e230 - Clinical Breast Cancer February 2019 
    through NF-kB signaling.43,44 A cross-talk between OPG and YKL-40 could be through enhancing angiogenesis; both stimulate endothelial cell survival and tube formation by inducing ERK1/2 and Akt phosphorylation.17,61
    We demonstrated association of VDR FokI and BsmI poly-morphisms with BC predisposition, with the minor BsmI A (B) allele and AG genotype associated with increased BC risk whereas the minor FokI C (F) allele and the presence of CTþCC genotypes were protective in our studied population. Other genetic variants in VDR, ApaI and TaqI, also conferred high BC susceptibility, particularly in Egyptian women.62 Together, these results support the notion that breast carcinogenesis may be affected by vitamin D/VDR signaling. Previous reports demonstrated inconsistent re-sults about association of FokI and BsmI with BC risk among different populations.22,26-29 This variability among different